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Project Tycho Version 2.0

Project Tycho 2.0 has become a repository for global health data in a standardized format that is more compliant with FAIR (Findable, Accessible, Interoperable, and Reusable) guidelines. The Project Tycho team continues to conduct research in the areas of infectious disease epidemiology and global health informatics, but also provides services to help health agencies and researchers to improve access and use of global health data.

In 2013, the first version of Project Tycho was released containing weekly case counts for 50 notifiable conditions reported by health agencies in the United States for 50 states and 1284 cities between 1888 and 2014. Over the past four years, over 3,000 users have registered to use Project Tycho data for a total of 40 creative works, including peer-reviewed research papers, visualizations, online applications, and newspaper articles.

The second version of Project Tycho has expanded its scope to a global level. The database now includes more data and is more extensively standardized. Project Tycho 2.0 includes case counts for 28 additional notifiable conditions for the US and includes data for dengue-related conditions for 100 countries between 1955 and 2010, obtained from the World Health Organization and national health agencies. Project Tycho 2.0 datasets are represented in a standard format registered with FAIRsharing (bsg-s000718) and includes standard codes to help integrate Project Tycho datasets with other datasets.

In addition to the data, the Project Tycho website (https://www.tycho.pitt.edu/) has been updated. More features will be added in the near future for an optimal user experience.

PHDL Faculty New Head of Machine Learning at CMU

Roni RosenfeldRoni Rosenfeld, PhD, an expert in Language Technologies, Machine Learning, Computer Science and Computational Biology, has been appointed Head of the Machine Learning Department at Carnegie Mellon University's (CMU) School of Computer Science. Dr. Rosenfeld is a faculty member of the PHDL at Pitt Public Health and an investigator for the University of Pittsburgh's MIDAS Center of Excellence. He is head of CMU's Delphi Research Group which selects high value epidemiological forecasting targets (currently Influenza and Dengue), creates baseline forecasting methods, establishes metrics for measuring and tracking forecasting accuracy, estimates the limits of forecastability for each target, and identifies new sources of data that could be helpful to the forecasting goal.


PHDL Director Speaks at Texas State Capitol

On May 2, 2018, Mark Roberts, MD, MPP, spoke to House and Senate members and staff at the Texas State Capitol as part of the Immunization Policy Series sponsored by The Texas Pediatric Society in collaboration with The Immunization Partnership and the Methodist Healthcare Ministries of South Texas, Inc. Using FRED, Dr. Roberts demonstrated what a measles outbreak would look like in various Texas legislative districts and discussed:

  • Vaccine preventable diseases making a comeback and why this is dangerous;
  • How each district could be impacted;
  • How does community immunity work and how constituents would fare in an outbreak.

Click here for more information.

 Brought to you by The Texas Pediatric Society in collaboration with The Immunization Partnership and Methodist Healthcare Ministries of South Texas, Inc.

2018 MIDAS Network Meeting

Wilbert Van Panhuis talk

The University of Pittsburgh MIDAS Center of Excellence participated in the April 3-5, 2018 MIDAS Network Meeting in Bethesda, Maryland, with three talks and eight posters. Representing the Pitt Center of Excellence were: Donald Burke, PI, Mark Roberts, Wilbert van Panhuis, Jeanine Buchanich, Tenley Brownwright, David Sinclair, Angel Paternina, Hasan Guclu, Derek Cummings, Rebecca Borchering, Bingyi Yang, and Logan Brooks.

Tenley Brownwright poster  David Sinclair poster  Angel Paternina poster
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